Resources

UCSF Limb Malformation Study

• Limb Study: our study on isolated limb malformations

Zebrafish Enhancer Database

• Zebrafish Enhancers: a public resource for experimentally validated genomic regions with suspected gene enhancer activity

Lab Intranet

• Lab Intranet

Plasmids

Sequences

• HSP68 LacZ gateway cassette.pdf

• E1b-GFP-tol2 enhancer vector.pdf

Maps

• HSP68 LacZ gateway reading frame A.pdf

Other

• Fish room visitors manual.pdf

• eExon ChIP-Seq BED files.zip   (Birnbaum Y et al.)
• Supplementary_Table_6_ChIPseq_Differential_Enrichment.xlxs

Links

• AddGene: a better way to share plasmids

• Genome browsers

  • Ensembl
  • HapMap
  • MGI
  • UCSC Browser
  • Zfin

• Comparative genomics

  • ECR Browser
  • PipMaker
  • Ultraconserved
  • Vista

• Function

  • Condor
  • cneBrowser
  • Enhancer LBL
  • Zetrap

• TFBS: transcription factor binding site

  • JASPAR
  • MatInspector
  • TRANSFAC

• Motif searches

  • Improbizer
  • MEME
  • Mobydick